Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs71423520 chr2:178804516 G/A 4.23E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs71428459 chr2:241767279 T/G 0.000189 488 29.4 32.7 32.63 KM Plot
PRAD rs71428460 chr2:241773265 C/A 2.05E-5 483 29.32 32.7 32.63 KM Plot
PRAD rs71483311 chr10:82326927 T/C 1.93E-6 485 31.28 27.5 20.18 KM Plot
PRAD rs71516606 chr8:142203122 C/T 0.000141 487 30.27 31.37 36.77 KM Plot
PRAD rs71533306 chr7:6705855 C/A 5.46E-11 482 30.93 27.4 38.33 KM Plot
PRAD rs7158235 chr14:32675081 C/T 1.35E-5 488 31.13 29.17 28.07 KM Plot
PRAD rs71591434 chr5:179043993 T/TA 1.69E-12 486 30.75 34.37 18.88 KM Plot
PRAD rs7163946 chr15:76766049 C/G 8.02E-5 494 28.3 31.87 30.87 KM Plot
PRAD rs7165025 chr15:76766434 G/A 8.02E-5 494 28.3 31.87 30.87 KM Plot
PRAD rs716535 chr9:72831808 A/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs7170185 chr15:68117300 T/A 9.96E-5 494 33.37 28.22 26.37 KM Plot
PRAD rs7172055 chr15:67938334 G/C 6.98E-5 489 33.37 27.97 27.58 KM Plot
PRAD rs71805656 chr1:94004218 AAAG/A 2.11E-9 490 31.27 28.22 27.72 KM Plot
PRAD rs71821468 chr7:135162708 TTAATA/T 2.3E-9 489 30.33 32.63 3.03 KM Plot